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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0456400.1

GATTTCAACTGAAAAAGTCATCAATAACAAAGTGGTATAACTCATCAAGATCTATAACTTTTATTTGGGTCATTTCTTCATCCGATAAAGTGATTTATAAGATCGTTCACAAAATGTACATATCTCTTATATAGTTTATAGACTATAGGAGATATATGTAAATTTTGTGAATAATATTACTATCACTTTATCGGATGAAGAAATGACCAAAATAAAAGTTATAGATATTGATGAGTTATACAACTTTATTGTTGATGACTTTTTTAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0920925
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0456400.1 osa-miR821a Cleavage 1.0 12.268 1 24
Osa01LNT0456400.1 osa-miR821b Cleavage 1.0 12.268 1 24
Osa01LNT0456400.1 osa-miR821c Cleavage 1.0 12.268 1 24
Osa01LNT0456400.1 osa-miR5157a-5p Cleavage 4.5 12.922 1 24
Osa01LNT0456400.1 osa-miR5157b-5p Cleavage 4.5 12.922 1 24
Osa01LNT0456400.1 osa-miR5506 Translation 4.0 22.955 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0456400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0456400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0456400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0456400.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0456400.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0456400.1 1 nan Morphological trait Root RM23 RM306
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus