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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0517200.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTTATCAAGATCTAAAACTTTTATTTTAGTCATTTCTTCATACGACAAAGTGATAGTTACATTGTTCACAAAATTGACATATCTCTTAGACATATCTCTTATCTATATGTAAAATTTGTGAATAATATTACTAATATTTCATCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTAAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.939569
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0517200.1 osa-miR821a Cleavage 1.0 14.266 1 24
Osa05LNT0517200.1 osa-miR821b Cleavage 1.0 14.266 1 24
Osa05LNT0517200.1 osa-miR821c Cleavage 1.0 14.266 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0517200.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0517200.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
Osa05LNT0517200.1 5 QKw5 Morphological trait Seed RG182 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa05LNT0517200.1 osa-MIR821a 90.182 275 1 274 1.19e-96 350
Osa05LNT0517200.1 osa-MIR821b 88.727 275 7 281 5.88e-90 327
Osa05LNT0517200.1 osa-MIR821c 88.679 265 1 264 4.22e-86 315
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus