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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa10LNT0569100.1

GATTTCAATTGAAAAAGTCATCAACAACAAAGTTGTATAACTCATCAAGATCTATAACTTTTATTTTGGTTGTTTCTTCATCCGACAAAGTGATAGTATCATTGTTTACAAAATTTACATCTATCTCATCTGGTTCTATAAACTATAAGAGAGAGATGTAAACTTTGTGAACAATGTTACTATCACTTTATCGGATGAATAAATGACCAAAATAAAAGTTGTATGTCTTGATGAGCTCTACAACTTTTATGTTCATGACTTTTTCATCTGAAATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.411335
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0569100.1 10 hwd1 Physiological trait Lethality nan nan
Osa10LNT0569100.1 10 nan Physiological trait Sterility C701 C16
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa10LNT0569100.1 osa-MIR821a 84.926 272 5 274 2.66e-73 272
Osa10LNT0569100.1 osa-MIR821c 84.03 263 6 266 1.21e-66 250
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus