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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0552500.1

GATTTCAACTGAAAAAGTTATCAACAACAAAGTTGAATAAAACATCAAGATCTAAAACTTTTATTTTGATCATTTCTTCATCTGATAAAATGTTAGTAACATTGTTCACAAATTTTATATATATGTGTTATAGTTTATAAAACCAGATAAGAGATATGTCAATTTTGTGAACAATGTTACTATTACTTTATCAGATGAAGAAATGACCAAAATAAAAGATTTATATCTTGATGAGTTATTTAACTTTGTTGTTGATAACTTTTTTAGTTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0396076
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0552500.1 osa-miR5079b Translation 3.5 11.88 1 22
Osa08LNT0552500.1 osa-miR5079a Translation 3.5 11.88 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0552500.1 8 hsa2(t) Physiological trait Sterility nan nan
Osa08LNT0552500.1 8 qALRR-8 Resistance or Tolerance Other soil stress tolerance RG978 C1121
Osa08LNT0552500.1 8 qDSR 8 Resistance or Tolerance Other soil stress tolerance RM3572 RM404
Osa08LNT0552500.1 8 hd8 Physiological trait Flowering RZ562 RG978
Osa08LNT0552500.1 8 dth8 Physiological trait Flowering RG333 RZ66
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa08LNT0552500.1 osa-MIR821a 90.545 275 1 274 1.53e-100 363
Osa08LNT0552500.1 osa-MIR821c 89.888 267 1 266 1.93e-94 342
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus