>Osa03LNT0220200.1

GATTTCAATTGAAAAAGTCATCAACAACGAAGTTGTATAACTCATCAAGATCTATAACTTTTATTTTGGTCGTTTCTTCATCCGACAAAGTGATAGTAATATTGTTTACAAAATTTACATCTGTCTCATCTGGTTCTATAAACTATATAAGAGAGATATGTAAACTTTGTGAACAATGTTACTATCACTTTATCGGATGAAGAAATAGTCAAAATAAAAGTTGTATGTCTTGATGAGCTCTACAACTTTTATGTTGATGACTTTTTCAGCTGAAATT

Explanation	CPC Score
noncoding (weak)	-0.201835

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0220200.1	3	gw3.1	Morphological trait	Seed	RZ672	RZ474
Osa03LNT0220200.1	3	qGL-3	Morphological trait	Seed	R19	C1677
Osa03LNT0220200.1	3	qLWR-3	Morphological trait	Seed	R19	C1677
Osa03LNT0220200.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0220200.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0220200.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0220200.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0220200.1	3	qDLR3	Resistance or Tolerance	Other soil stress tolerance	RM338	RM2453
Osa03LNT0220200.1	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0220200.1	3	An5(t)	Morphological trait	Panicle/flower	C1677	R19
Osa03LNT0220200.1	3	nan	Morphological trait	Shoot/Seedling	RZ284	RZ403
Osa03LNT0220200.1	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0220200.1	3	nan	Morphological trait	Panicle/flower	RZ403	RZ452

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa03LNT0220200.1	osa-MIR821a	85.036	274	5	274	7.39e-74	274

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus