>Osa01LNT0460000.1

GATTTCAATTGAAAAAGTCATTACCAACAAGGTTGAATAACTCATCAAGATCTAAAACTTTTTTTTTGTTATTTCTTCATCCGACGAAATGTTAGTAATATTATTCACAAATTTTACATATATGTGTTATAGTTTATAGAACATGATAAGAGATATGTCAATTTTATGAACAATGTTACTATCATTTTGTCGTATGAAGAAATGACCAAAATAAATGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAGTTGATGAG

Explanation	CPC Score
noncoding (weak)	-0.819895

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0460000.1	osa-miR5528	Cleavage	3.5	10.393	1	21
Osa01LNT0460000.1	osa-miR821a	Cleavage	1.0	16.968	1	24
Osa01LNT0460000.1	osa-miR821b	Cleavage	1.0	16.968	1	24
Osa01LNT0460000.1	osa-miR821c	Cleavage	1.0	16.968	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0460000.1	1	yld1.1	Physiological trait	Source activity	RM5	RG462
Osa01LNT0460000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0460000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0460000.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0460000.1	1	nan	Morphological trait	Seed	CDO118	CDO455
Osa01LNT0460000.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0460000.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa01LNT0460000.1	osa-MIR821a	94.096	271	4	274	1.5e-115	412
Osa01LNT0460000.1	osa-MIR821b	93.015	272	7	278	1.59e-110	396
Osa01LNT0460000.1	osa-MIR821c	92.509	267	1	266	4.1e-106	381

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus