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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0522700.1

GATTTCAACTGAAAAAGTTATCAACAACAGAGTAGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATCCGATAAAGTGATAGTAACATTATTCACAAAATTGACATATTTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAACAATGTTATGAACATTTTATCGGATGAAGAAATGACAAAAATAAAAGTTTTAGATCTTGATGAGTTATACAATTTTGTTGTTGATTACTTTTTCAGCTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.120238
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0522700.1 osa-miR5162 Cleavage 5.0 9.907 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0522700.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0522700.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0522700.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0522700.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa07LNT0522700.1 osa-MIR821a 90.545 275 1 274 1.53e-100 363
Osa07LNT0522700.1 osa-MIR821c 91.985 262 1 261 1.15e-101 366
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus