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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0484200.1

GATTTCAATTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGTTCTAAAACTTTTATTTTTGTTATTTCTTCATCCGAAGAAATGTTAGTAATATTATTCACAAATTTTACATATATGTGTTATAGTTTATAAACGAGATAAGAGATATGTCAATTTTGCGAACAATGTTACTATCACTTTGTCGTATGAAGAAATGACCAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATAACTTTTTCAGTTGATATA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.00701438
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0484200.1 osa-miR821a Cleavage 2.5 17.694 1 24
Osa04LNT0484200.1 osa-miR821b Cleavage 2.5 17.694 1 24
Osa04LNT0484200.1 osa-miR821c Cleavage 2.5 17.694 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0484200.1 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
Osa04LNT0484200.1 4 nan Resistance or Tolerance Other soil stress tolerance C946 R1854
Osa04LNT0484200.1 4 qOVA-4 Resistance or Tolerance Insect resistance R1854 C946
Osa04LNT0484200.1 4 qCTS4-1 Resistance or Tolerance Cold tolerance RM335 RM261
Osa04LNT0484200.1 4 qSNP-4a Morphological trait Panicle/flower RM401 RM335
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa04LNT0484200.1 osa-MIR821a 95.62 274 2 274 2.48e-123 438
Osa04LNT0484200.1 osa-MIR821b 93.796 274 7 280 5.68e-115 411
Osa04LNT0484200.1 osa-MIR821c 94.007 267 1 266 8.75e-113 403
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus