Transcript

Sequence

>Osa12LNT0563500.1

GATATGAACTGAAAAAGTCATCAACAATAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGATCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGTTTTATAAATTATAACACATATATGTAAAATTTATGAATAATGTTACTAACATTTTGTTGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGGAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.893976

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0563500.1	osa-miR821a	Cleavage	1.0	14.496	1	24
Osa12LNT0563500.1	osa-miR821a	Translation	4.0	8.248	1	24
Osa12LNT0563500.1	osa-miR821b	Cleavage	1.0	14.496	1	24
Osa12LNT0563500.1	osa-miR821b	Translation	4.0	8.248	1	24
Osa12LNT0563500.1	osa-miR821c	Cleavage	1.0	14.496	1	24
Osa12LNT0563500.1	osa-miR821c	Translation	4.0	8.248	1	24
Osa12LNT0563500.1	osa-miR1881	Cleavage	4.5	23.281	1	24
Osa12LNT0563500.1	osa-miR2931	Cleavage	4.0	11.187	1	20

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0563500.1	12	qDLA-12-3	Resistance or Tolerance	Blast resistance	RG463	RZ816
Osa12LNT0563500.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0563500.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0563500.1	12	nan	Resistance or Tolerance	Other soil stress tolerance	RG9	RG241
Osa12LNT0563500.1	12	nan	Morphological trait	Seed	RG543	RG81

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa12LNT0563500.1	osa-MIR821a	94.545	275	1	274	6.93e-119	424
Osa12LNT0563500.1	osa-MIR821b	92.364	275	7	281	7.39e-109	390
Osa12LNT0563500.1	osa-MIR821c	94.697	264	3	265	1.88e-114	409

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus