>Osa09LNT0578900.1

GATTTCAACTGAAAAAGTCATCAACAACAAAGTTGTATAACTCATAAAGATCTATAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGTGATTTGTAAGATAGTTCACAAAATGAACATATCTCTTATATAGTTCGTAAAACTTTTAGAGAGATATGTTCATTTTGTGAACAATCTTACAAATCACTTTGTCGGATGAAGAAATGACCAAAATAAAAGTTATAGATCTTGATGAGTTATATCACTTTGTTATAGATGACTTTTTCTGTTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.398812

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0578900.1	osa-miR5081	Cleavage	4.0	10.891	1	22
Osa09LNT0578900.1	osa-miR5162	Cleavage	5.0	12.715	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0578900.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0578900.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0578900.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122
Osa09LNT0578900.1	9	Sub-1(t)	Resistance or Tolerance	Submergency tolerance	C1232	RZ698
Osa09LNT0578900.1	9	apd9	Others	Others	CDO590	G103
Osa09LNT0578900.1	9	Sub1	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa09LNT0578900.1	9	nan	Morphological trait	Root	C711	G103
Osa09LNT0578900.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa09LNT0578900.1	osa-MIR821b	83.154	279	7	281	1.31e-66	250

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus