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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0497500.1

GATATCAACCGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTAATAGTAGCAATGTTTACAAAATTGACATATATCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCATCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTCATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.00403
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0497500.1 osa-miR821a Cleavage 1.0 15.227 1 24
Osa06LNT0497500.1 osa-miR821a Translation 4.5 8.333 1 24
Osa06LNT0497500.1 osa-miR821b Cleavage 1.0 15.227 1 24
Osa06LNT0497500.1 osa-miR821b Translation 4.5 8.333 1 24
Osa06LNT0497500.1 osa-miR821c Cleavage 1.0 15.227 1 24
Osa06LNT0497500.1 osa-miR821c Translation 4.5 8.333 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0497500.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0497500.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0497500.1 6 Xa7 Resistance or Tolerance Bacterial blight resistance nan nan
Osa06LNT0497500.1 6 AsTol Resistance or Tolerance Other soil stress tolerance RZ516 RG213
Osa06LNT0497500.1 6 qRCRJ-6 Physiological trait Source activity RM217 RM402
Osa06LNT0497500.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0497500.1 6 alk6-1 Physiological trait Eating quality RM190 RM253
Osa06LNT0497500.1 6 qASV6-1 Physiological trait Eating quality RM111 RM314
Osa06LNT0497500.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0497500.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0497500.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0497500.1 6 qLW-6 Morphological trait Seed RM217 RM111
Osa06LNT0497500.1 6 hr6 Physiological trait Eating quality RM190 RM253
Osa06LNT0497500.1 6 nan Morphological trait Seed RG138 RZ398
Osa06LNT0497500.1 6 nan Morphological trait Panicle/flower RG138 RZ398
Osa06LNT0497500.1 6 nan Physiological trait Source activity RG138 RZ398
Osa06LNT0497500.1 6 qSPTF6 Physiological trait Sterility RM217 RM111
Osa06LNT0497500.1 6 rrsd6b Resistance or Tolerance Drought tolerance RM253 RM314
Osa06LNT0497500.1 6 qRCT6b Resistance or Tolerance Cold tolerance R1954 RM253
Osa06LNT0497500.1 6 QGt6b Physiological trait Eating quality RM253 RM314
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa06LNT0497500.1 osa-MIR821a 94.909 275 1 274 1.49e-120 429
Osa06LNT0497500.1 osa-MIR821b 93.818 275 7 281 4.39e-116 414
Osa06LNT0497500.1 osa-MIR821c 93.258 267 1 266 1.89e-109 392
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus