Transcript

Sequence

>Osa08LNT0547200.1

GATTTCAATTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTTGTTATTTCTTCATCCGATAAAATGTTAGTAATATTATTCACAAATTTTACATATATGTGTTATAGTTTATAAAACCAGATAAGAGATATGTCAATTTTGTGAACAATGTTACTATCACTTTATCGTATGAAGAAATGACCAAAATAAAAGTTTTAGACCTTAATGAGTTATTCAACTTTGTTGTTTATAACTTTTTCAGTTGATATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.251255

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0547200.1	8	hd8	Physiological trait	Flowering	RZ562	RG978
Osa08LNT0547200.1	8	nfb8	Morphological trait	Panicle/flower	RG108	RZ562
Osa08LNT0547200.1	8	nfb8	Morphological trait	Seed	RG108	RZ562
Osa08LNT0547200.1	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0547200.1	8	qALRR-8	Resistance or Tolerance	Other soil stress tolerance	RG978	C1121
Osa08LNT0547200.1	8	nan	Resistance or Tolerance	Drought tolerance	RM72	RM331
Osa08LNT0547200.1	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa08LNT0547200.1	osa-MIR821a	95.273	275	1	274	3.2e-122	435
Osa08LNT0547200.1	osa-MIR821b	93.455	275	7	281	2.04e-114	409
Osa08LNT0547200.1	osa-MIR821c	94.382	267	1	266	1.88e-114	409

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus