Transcript

Sequence

>Osa04LNT0490300.1

GATTTCAACTGAAAAAGTCATCAACAACAAAGTTGTATAGCTCATTAAGATCTATAAATTTTATTTTGGTCATTTCTTTATCCGACAAAGTAATAGTAATATTGTTCACAAAATTCACATCTCTCATCTAGATTTATAAACTATAACACAGATTTGTAATTTTTGTGAACAATGTTACTAACACTTTGTCGGATGAAGAAATGACCAAAATAAAAGTTGTAGATCTTGATGAGTTTTACAACTTTGTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.132052

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0490300.1	osa-miR5157a-5p	Translation	4.5	17.887	1	24
Osa04LNT0490300.1	osa-miR5157b-5p	Translation	4.5	17.887	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0490300.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0490300.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0490300.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0490300.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0490300.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0490300.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0490300.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0490300.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa04LNT0490300.1	osa-MIR821b	85.455	275	7	281	3.59e-77	285

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus