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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0518600.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGATAAAGTGATAGTAACATTGTTCATAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAGCACATATATGTAAAATTTATGAATAATATTACTAACATTTCGTCAGATGAAGAAATAACAAAAATTAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACGTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.17349
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0518600.1 osa-miR5802 Translation 5.0 14.416 1 24
Osa05LNT0518600.1 osa-miR821a Cleavage 2.5 13.694 1 24
Osa05LNT0518600.1 osa-miR821a Translation 4.5 8.184 1 24
Osa05LNT0518600.1 osa-miR821b Cleavage 2.5 13.694 1 24
Osa05LNT0518600.1 osa-miR821b Translation 4.5 8.184 1 24
Osa05LNT0518600.1 osa-miR821c Cleavage 2.5 13.694 1 24
Osa05LNT0518600.1 osa-miR821c Translation 4.5 8.184 1 24
Osa05LNT0518600.1 osa-miR5162 Cleavage 5.0 8.184 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0518600.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0518600.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa05LNT0518600.1 osa-MIR821a 96.014 276 1 274 4.11e-126 448
Osa05LNT0518600.1 osa-MIR821b 94.203 276 7 281 9.43e-118 420
Osa05LNT0518600.1 osa-MIR821c 94.403 268 1 266 5.23e-115 411
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus