Transcript

Sequence

>Osa01LNT0457900.1

GATTTCAACTGAAAAAGTCATCAACAACAAAGTTGTATAACTCATCAAGATCTATAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGTGATAGTAACATTGTTTATAAAATTCACATATCTCTCATCTAGTTTTGTAAACAATAAAACATATATGTAAATTTTGTGAACAATGTTACTAGCACTTTATCGGATGAAGAAATGATAAATATAAAAGTTATAGATCTTGGTGAGTTATACAACTTTGTTGTTGATGACTTTTTTTAGTTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.227538

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0457900.1	osa-miR821a	Cleavage	1.0	12.09	1	24
Osa01LNT0457900.1	osa-miR821a	Translation	4.5	10.282	1	24
Osa01LNT0457900.1	osa-miR821b	Cleavage	1.0	12.09	1	24
Osa01LNT0457900.1	osa-miR821b	Translation	4.5	10.282	1	24
Osa01LNT0457900.1	osa-miR821c	Cleavage	1.0	12.09	1	24
Osa01LNT0457900.1	osa-miR821c	Translation	4.5	10.282	1	24
Osa01LNT0457900.1	osa-miR5162	Cleavage	5.0	10.282	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0457900.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0457900.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0457900.1	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178
Osa01LNT0457900.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0457900.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0457900.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0457900.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0457900.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa01LNT0457900.1	osa-MIR821b	87.319	276	7	281	4.58e-86	315

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus