Transcript

Sequence

>Osa10LNT0570100.1

GATTTCAACTGAAAAAGTCATCAACAAAAAAGTTGTATAACTCATCAATATCTATAACTTTTATTTTGGTCATTTCTTCATCCGAAAAAGTGATAGTAATATTGTTTATAAAATTTACATATCTCTTGTATGATATAATAAACTATAAGAGAGATATGTAAATTTTGTGAACAATGTTACTATCACTTTGTCGAATGAAGAAATGATCAAAATAAAAGTTATAGATATTGATGAGTTATACAACTTTCTTGTTGATGACTTTTTCAGTTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.0371384

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa10LNT0570100.1	osa-miR821a	Cleavage	1.0	14.402	1	24
Osa10LNT0570100.1	osa-miR821a	Translation	4.5	12.721	1	24
Osa10LNT0570100.1	osa-miR821b	Cleavage	1.0	14.402	1	24
Osa10LNT0570100.1	osa-miR821b	Translation	4.5	12.721	1	24
Osa10LNT0570100.1	osa-miR821c	Cleavage	1.0	14.402	1	24
Osa10LNT0570100.1	osa-miR821c	Translation	4.5	12.721	1	24
Osa10LNT0570100.1	osa-miR5157a-5p	Cleavage	4.5	13.803	1	24
Osa10LNT0570100.1	osa-miR5157b-5p	Cleavage	4.5	13.803	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa10LNT0570100.1	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0570100.1	10	nan	Resistance or Tolerance	Other stress resistance	R1933	R1629
Osa10LNT0570100.1	10	nan	Physiological trait	Sterility	R2309	RG257
Osa10LNT0570100.1	10	nan	Physiological trait	Sterility	C701	C16

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa10LNT0570100.1	osa-MIR821a	85.921	277	1	274	7.34e-79	291
Osa10LNT0570100.1	osa-MIR821c	86.142	267	1	266	9.19e-78	287

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus