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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0538100.1

GATATCAACTGAAAAAGTCATCAACAACAAATTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTTATTTCTTCATACAACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAGAATTTGTGAATAATGTTACTAACATTTTGTCAAATGAAGAAATAATAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.936727
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0538100.1 osa-miR821a Cleavage 1.0 14.488 1 24
Osa11LNT0538100.1 osa-miR821a Translation 4.5 7.356 1 24
Osa11LNT0538100.1 osa-miR821b Cleavage 1.0 14.488 1 24
Osa11LNT0538100.1 osa-miR821b Translation 4.5 7.356 1 24
Osa11LNT0538100.1 osa-miR821c Cleavage 1.0 14.488 1 24
Osa11LNT0538100.1 osa-miR821c Translation 4.5 7.356 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0538100.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0538100.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0538100.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa11LNT0538100.1 osa-MIR821a 95.636 275 1 274 6.88e-124 440
Osa11LNT0538100.1 osa-MIR821b 93.455 275 7 281 2.04e-114 409
Osa11LNT0538100.1 osa-MIR821c 95.506 267 1 266 1.87e-119 425
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus