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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0224100.1

GATATCAGCTGAAAAAGTCATCAACAAAAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAGAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCAGATGAAGAAATAAAAAAATAAAAGTTATAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.21966
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0224100.1 osa-miR821a Cleavage 1.0 14.136 1 24
Osa03LNT0224100.1 osa-miR821a Translation 4.5 7.582 1 24
Osa03LNT0224100.1 osa-miR821b Cleavage 1.0 14.136 1 24
Osa03LNT0224100.1 osa-miR821b Translation 4.5 7.582 1 24
Osa03LNT0224100.1 osa-miR821c Cleavage 1.0 14.136 1 24
Osa03LNT0224100.1 osa-miR821c Translation 4.5 7.582 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0224100.1 3 nan Morphological trait Shoot/Seedling RZ284 RZ403
Osa03LNT0224100.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0224100.1 3 nan Morphological trait Panicle/flower RZ403 RZ452
Osa03LNT0224100.1 3 An5(t) Morphological trait Panicle/flower C1677 R19
Osa03LNT0224100.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0224100.1 3 nan Resistance or Tolerance Insect resistance G332 R19
Osa03LNT0224100.1 3 qGL-3 Morphological trait Seed R19 C1677
Osa03LNT0224100.1 3 qLWR-3 Morphological trait Seed R19 C1677
Osa03LNT0224100.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0224100.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0224100.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0224100.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0224100.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0224100.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa03LNT0224100.1 osa-MIR821a 100.0 274 1 274 6.69e-144 507
Osa03LNT0224100.1 osa-MIR821b 93.818 275 7 281 1.58e-115 412
Osa03LNT0224100.1 osa-MIR821c 95.506 267 1 266 1.87e-119 425
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus