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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0578400.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAATGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCATCAGATAAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCGACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.963445
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0578400.1 osa-miR821a Cleavage 1.0 14.913 1 24
Osa09LNT0578400.1 osa-miR821b Cleavage 1.0 14.913 1 24
Osa09LNT0578400.1 osa-miR821b Translation 4.5 8.477 1 24
Osa09LNT0578400.1 osa-miR821c Cleavage 1.0 14.913 1 24
Osa09LNT0578400.1 osa-miR821c Translation 4.5 8.477 1 24
Osa09LNT0578400.1 osa-miR5162 Cleavage 5.0 8.477 1 24
Osa09LNT0578400.1 osa-miR821a Translation 4.5 8.477 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0578400.1 9 apd9 Others Others CDO590 G103
Osa09LNT0578400.1 9 nan Morphological trait Root C711 G103
Osa09LNT0578400.1 9 clr9 Resistance or Tolerance Cold tolerance RM285 RM434
Osa09LNT0578400.1 9 qAC9 Physiological trait Eating quality RM4413 RM5122
Osa09LNT0578400.1 9 qPC9 Physiological trait Eating quality RM4413 RM1896
Osa09LNT0578400.1 9 Sub-1(t) Resistance or Tolerance Submergency tolerance C1232 RZ698
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa09LNT0578400.1 osa-MIR821c 94.776 268 1 266 1.12e-116 416
Osa09LNT0578400.1 osa-MIR821a 96.377 276 1 274 8.84e-128 453
Osa09LNT0578400.1 osa-MIR821b 93.841 276 7 281 4.39e-116 414
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus