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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0485500.1

GATTTCAATTGAAAAGGTTATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATCTGATAAAGCGATAGTAACATTGTTCACAAAATTGGCATATCTCTTATCTGGTTTTATAAACTATAACACATATATATATAATTTATGAACAATGTTACTAACATTTTATCGGATGAAGAAATGACCAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATAACTTTTTCAGCTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.801249
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0485500.1 osa-miR821a Cleavage 2.5 16.253 1 24
Osa04LNT0485500.1 osa-miR821a Translation 4.5 11.146 1 24
Osa04LNT0485500.1 osa-miR821b Cleavage 2.5 16.253 1 24
Osa04LNT0485500.1 osa-miR821b Translation 4.5 11.146 1 24
Osa04LNT0485500.1 osa-miR821c Cleavage 2.5 16.253 1 24
Osa04LNT0485500.1 osa-miR821c Translation 4.5 11.146 1 24
Osa04LNT0485500.1 osa-miR5162 Cleavage 5.0 11.146 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0485500.1 4 qOVA-4 Resistance or Tolerance Insect resistance R1854 C946
Osa04LNT0485500.1 4 qCTS4-1 Resistance or Tolerance Cold tolerance RM335 RM261
Osa04LNT0485500.1 4 qSNP-4a Morphological trait Panicle/flower RM401 RM335
Osa04LNT0485500.1 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
Osa04LNT0485500.1 4 nan Resistance or Tolerance Other soil stress tolerance C946 R1854
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa04LNT0485500.1 osa-MIR821a 90.182 275 1 274 7.13e-99 357
Osa04LNT0485500.1 osa-MIR821c 90.458 262 1 261 5.38e-95 344
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus