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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0534500.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGATAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTCTGAATAATATTACTAACATTTCGTCAGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.970122
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0534500.1 osa-miR821a Cleavage 1.0 14.831 1 24
Osa11LNT0534500.1 osa-miR821a Translation 4.5 7.146 1 24
Osa11LNT0534500.1 osa-miR821b Cleavage 1.0 14.831 1 24
Osa11LNT0534500.1 osa-miR821b Translation 4.5 7.146 1 24
Osa11LNT0534500.1 osa-miR821c Cleavage 1.0 14.831 1 24
Osa11LNT0534500.1 osa-miR821c Translation 4.5 7.146 1 24
Osa11LNT0534500.1 osa-miR5162 Cleavage 5.0 7.146 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0534500.1 11 nan Morphological trait Seed RM332 RM229
Osa11LNT0534500.1 11 elr11-1 Physiological trait Eating quality RM1812 RM209
Osa11LNT0534500.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa11LNT0534500.1 osa-MIR821a 97.455 275 1 274 3.16e-132 468
Osa11LNT0534500.1 osa-MIR821b 94.909 275 7 281 4.36e-121 431
Osa11LNT0534500.1 osa-MIR821c 95.88 267 1 266 4.01e-121 431
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus