Transcript

Sequence

>Osa08LNT0550100.1

GATTTCAACTGAAAAAGTCATCAACAACAAAGTTGTACAACTCATCAAGATCTATAACTTTTATTTTGGTCATTTCTTCATCCGACAAAGTGATAGTAATATTGTTCATAAAATTCACATATCTCTCATCTAGTTTTATAAACTATAACACAAATGTGTGAATTTTGTGAACAATGTTACTAGCACTTTGTCACATGAAGAAATAACACACATAAAAGTTATAGATCTTGGTGAGTTATACAACTTTGTTGTTGATGACTTTTTTAGTTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.299302

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa08LNT0550100.1	osa-miR821a	Cleavage	1.0	11.625	1	24
Osa08LNT0550100.1	osa-miR821a	Translation	4.5	9.696	1	24
Osa08LNT0550100.1	osa-miR821b	Cleavage	1.0	11.625	1	24
Osa08LNT0550100.1	osa-miR821b	Translation	4.5	9.696	1	24
Osa08LNT0550100.1	osa-miR821c	Cleavage	1.0	11.625	1	24
Osa08LNT0550100.1	osa-miR821c	Translation	4.5	9.696	1	24
Osa08LNT0550100.1	osa-miR5162	Cleavage	5.0	9.696	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa08LNT0550100.1	8	nan	Resistance or Tolerance	Drought tolerance	RM72	RM331
Osa08LNT0550100.1	8	qDSR 8	Resistance or Tolerance	Other soil stress tolerance	RM3572	RM404
Osa08LNT0550100.1	8	dth8	Physiological trait	Flowering	RG333	RZ66
Osa08LNT0550100.1	8	hd8	Physiological trait	Flowering	RZ562	RG978
Osa08LNT0550100.1	8	qALRR-8	Resistance or Tolerance	Other soil stress tolerance	RG978	C1121
Osa08LNT0550100.1	8	hsa2(t)	Physiological trait	Sterility	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa08LNT0550100.1	osa-MIR821b	86.545	275	7	281	9.91e-83	303

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus