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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0482600.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAACTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCGGATAAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAATTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding -1.01374
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0482600.1 osa-miR821a Cleavage 1.5 12.778 1 24
Osa04LNT0482600.1 osa-miR821b Cleavage 1.5 12.778 1 24
Osa04LNT0482600.1 osa-miR821b Translation 4.5 7.279 1 24
Osa04LNT0482600.1 osa-miR821c Cleavage 1.5 12.778 1 24
Osa04LNT0482600.1 osa-miR821a Translation 4.5 7.279 1 24
Osa04LNT0482600.1 osa-miR821c Translation 4.5 7.279 1 24
Osa04LNT0482600.1 osa-miR5162 Cleavage 5.0 7.279 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa04LNT0482600.1 osa-MIR821b 94.909 275 7 281 4.36e-121 431
Osa04LNT0482600.1 osa-MIR821c 95.131 267 1 266 8.68e-118 420
Osa04LNT0482600.1 osa-MIR821a 96.727 275 1 274 6.84e-129 457
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus