>Osa11LNT0543000.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTATTCATAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTATGAATAATATTACTAACATTTCGTTGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAATTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.760085

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa11LNT0543000.1	osa-miR821a	Cleavage	1.0	11.708	1	24
Osa11LNT0543000.1	osa-miR821a	Translation	4.5	7.53	1	24
Osa11LNT0543000.1	osa-miR821b	Cleavage	1.0	11.708	1	24
Osa11LNT0543000.1	osa-miR821b	Translation	4.5	7.53	1	24
Osa11LNT0543000.1	osa-miR821c	Cleavage	1.0	11.708	1	24
Osa11LNT0543000.1	osa-miR821c	Translation	4.5	7.53	1	24
Osa11LNT0543000.1	osa-miR1881	Cleavage	4.5	24.095	1	24
Osa11LNT0543000.1	osa-miR5162	Cleavage	5.0	7.53	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa11LNT0543000.1	11	gpl11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0543000.1	11	gw11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0543000.1	11	yld11.1	Resistance or Tolerance	Drought tolerance	RZ537	RZ900
Osa11LNT0543000.1	11	qDLR11	Resistance or Tolerance	Other soil stress tolerance	RM2596	RM286
Osa11LNT0543000.1	11	Xa21	Resistance or Tolerance	Bacterial blight resistance	CDO534	RZ537
Osa11LNT0543000.1	11	chs	Others	Others	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa11LNT0543000.1	osa-MIR821a	96.0	275	1	274	1.48e-125	446
Osa11LNT0543000.1	osa-MIR821b	95.636	275	7	281	2.01e-124	442
Osa11LNT0543000.1	osa-MIR821c	95.131	267	1	266	8.68e-118	420

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus