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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa07LNT0525500.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAATATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATTTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCAGATGAAGAAATAACAAAAGTAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACCTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.169748
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa07LNT0525500.1 osa-miR5528 Cleavage 4.5 10.973 1 21
Osa07LNT0525500.1 osa-miR821a Cleavage 2.5 12.652 1 24
Osa07LNT0525500.1 osa-miR821a Translation 4.5 6.067 1 24
Osa07LNT0525500.1 osa-miR821b Cleavage 2.5 12.652 1 24
Osa07LNT0525500.1 osa-miR821b Translation 4.5 6.067 1 24
Osa07LNT0525500.1 osa-miR821c Cleavage 2.5 12.652 1 24
Osa07LNT0525500.1 osa-miR821c Translation 4.5 6.067 1 24
Osa07LNT0525500.1 osa-miR1881 Cleavage 4.5 24.515 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa07LNT0525500.1 7 hwd2 Physiological trait Lethality nan nan
Osa07LNT0525500.1 7 gp7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0525500.1 7 gw7 Morphological trait Panicle/flower R1440 RG128
Osa07LNT0525500.1 7 tp7b Morphological trait Culm/leaf R1440 RG128
Osa07LNT0525500.1 7 yd7a Morphological trait Panicle/flower R1440 RG128
Osa07LNT0525500.1 7 dth7.1 Physiological trait Flowering RM125 RM336
Osa07LNT0525500.1 7 qah7 Physiological trait Flowering R2401 C1226
Osa07LNT0525500.1 7 nan Resistance or Tolerance Insect resistance RG773 CDO59
Osa07LNT0525500.1 7 qHd-7 Physiological trait Flowering RM125 RM432
Osa07LNT0525500.1 7 nan Physiological trait Flowering R2401 R1440
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa07LNT0525500.1 osa-MIR821a 96.727 275 1 274 6.84e-129 457
Osa07LNT0525500.1 osa-MIR821b 94.182 275 7 281 9.43e-118 420
Osa07LNT0525500.1 osa-MIR821c 95.506 267 1 266 1.87e-119 425
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus