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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0565200.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGGATAACTCGTCAAGATCTAAAACTTTTATTTTAATCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAATTTTGTGAATAATATTACTAACATTTCGTCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.983583
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0565200.1 osa-miR821a Cleavage 1.0 14.62 1 24
Osa12LNT0565200.1 osa-miR821a Translation 5.0 6.898 1 24
Osa12LNT0565200.1 osa-miR821b Cleavage 1.0 14.62 1 24
Osa12LNT0565200.1 osa-miR821b Translation 5.0 6.898 1 24
Osa12LNT0565200.1 osa-miR821c Cleavage 1.0 14.62 1 24
Osa12LNT0565200.1 osa-miR821c Translation 5.0 6.898 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0565200.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0565200.1 12 nan Morphological trait Seed RG543 RG81
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa12LNT0565200.1 osa-MIR821a 96.0 275 1 274 1.48e-125 446
Osa12LNT0565200.1 osa-MIR821b 94.545 275 7 281 2.03e-119 425
Osa12LNT0565200.1 osa-MIR821c 94.382 267 1 266 1.88e-114 409
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus