>Osa09LNT0581500.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTAGTTTTATAAACTATAATACATATATGTAAATTTATAAATAATATTACTAACATTTCGTCAGATAAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Explanation	CPC Score
noncoding	-1.02451

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa09LNT0581500.1	osa-miR5802	Translation	5.0	12.096	1	24
Osa09LNT0581500.1	osa-miR821a	Cleavage	1.0	15.686	1	24
Osa09LNT0581500.1	osa-miR821a	Translation	4.5	6.668	1	24
Osa09LNT0581500.1	osa-miR821b	Cleavage	1.0	15.686	1	24
Osa09LNT0581500.1	osa-miR821b	Translation	4.5	6.668	1	24
Osa09LNT0581500.1	osa-miR821c	Cleavage	1.0	15.686	1	24
Osa09LNT0581500.1	osa-miR821c	Translation	4.5	6.668	1	24
Osa09LNT0581500.1	osa-miR1881	Cleavage	4.5	16.708	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa09LNT0581500.1	9	qLG-9	Physiological trait	Germination/dormancy	G103	R1751
Osa09LNT0581500.1	9	nan	Resistance or Tolerance	Drought tolerance	R1164	R79
Osa09LNT0581500.1	9	nan	Morphological trait	Shoot/Seedling	RG553	RZ206
Osa09LNT0581500.1	9	clr9	Resistance or Tolerance	Cold tolerance	RM285	RM434
Osa09LNT0581500.1	9	qPC9	Physiological trait	Eating quality	RM4413	RM1896
Osa09LNT0581500.1	9	qAC9	Physiological trait	Eating quality	RM4413	RM5122

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa09LNT0581500.1	osa-MIR821a	96.0	275	1	274	1.48e-125	446
Osa09LNT0581500.1	osa-MIR821b	93.455	275	7	281	7.34e-114	407
Osa09LNT0581500.1	osa-MIR821c	94.382	267	1	266	1.88e-114	409

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus