\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa08LNT0556600.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAATATTGTTCATAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCGGATGAAGAAATAACAAAAGTAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.990569
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0556600.1 osa-miR821a Cleavage 1.0 14.447 1 24
Osa08LNT0556600.1 osa-miR821a Translation 4.5 7.514 1 24
Osa08LNT0556600.1 osa-miR821b Cleavage 1.0 14.447 1 24
Osa08LNT0556600.1 osa-miR821b Translation 4.5 7.514 1 24
Osa08LNT0556600.1 osa-miR821c Cleavage 1.0 14.447 1 24
Osa08LNT0556600.1 osa-miR821c Translation 4.5 7.514 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0556600.1 8 aro8-1 Physiological trait Eating quality RM223 RM80
Osa08LNT0556600.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0556600.1 8 qPN-8 Morphological trait Seed RM223 RM80
Osa08LNT0556600.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0556600.1 8 nan Physiological trait Source activity R727 R202
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa08LNT0556600.1 osa-MIR821a 96.727 275 1 274 6.84e-129 457
Osa08LNT0556600.1 osa-MIR821b 95.636 275 7 281 2.01e-124 442
Osa08LNT0556600.1 osa-MIR821c 95.131 267 1 266 8.68e-118 420
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus