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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0582700.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATCTCTTATCTGGTTTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCAGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.96467
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa09LNT0582700.1 osa-miR821a Cleavage 1.0 14.511 1 24
Osa09LNT0582700.1 osa-miR821b Cleavage 1.0 14.511 1 24
Osa09LNT0582700.1 osa-miR821c Cleavage 1.0 14.511 1 24
Osa09LNT0582700.1 osa-miR1881 Cleavage 4.5 23.506 1 24
Osa09LNT0582700.1 osa-miR821a Translation 4.5 6.995 1 24
Osa09LNT0582700.1 osa-miR821b Translation 4.5 6.995 1 24
Osa09LNT0582700.1 osa-miR821c Translation 4.5 6.995 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0582700.1 9 qSB-9 Resistance or Tolerance Sheath blight resistance C472 R2638
Osa09LNT0582700.1 9 nan Morphological trait Panicle/flower RM257 RM566
Osa09LNT0582700.1 9 rdw9 Resistance or Tolerance Drought tolerance R79 R2638
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa09LNT0582700.1 osa-MIR821b 94.203 276 8 281 3.39e-117 418
Osa09LNT0582700.1 osa-MIR821c 95.539 269 1 266 1.87e-119 425
Osa09LNT0582700.1 osa-MIR821a 96.739 276 1 273 2.46e-128 455
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus