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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0513700.1

GATATCAACTGAAAAAGTCATCAACAATAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCGGATGAAGAAATAACAAAAGTAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.990569
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0513700.1 osa-miR821a Cleavage 1.0 14.447 1 24
Osa05LNT0513700.1 osa-miR821a Translation 4.5 6.717 1 24
Osa05LNT0513700.1 osa-miR821b Cleavage 1.0 14.447 1 24
Osa05LNT0513700.1 osa-miR821b Translation 4.5 6.717 1 24
Osa05LNT0513700.1 osa-miR821c Cleavage 1.0 14.447 1 24
Osa05LNT0513700.1 osa-miR821c Translation 4.5 6.717 1 24
Osa05LNT0513700.1 osa-miR2931 Cleavage 4.0 9.573 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0513700.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0513700.1 5 An7-glum Morphological trait Panicle/flower nan nan
Osa05LNT0513700.1 5 gnp5.1 Morphological trait Panicle/flower RM194 RM249
Osa05LNT0513700.1 5 snp5.1 Morphological trait Panicle/flower RM194 RM249
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa05LNT0513700.1 osa-MIR821a 97.455 275 1 274 3.16e-132 468
Osa05LNT0513700.1 osa-MIR821b 95.273 275 7 281 9.37e-123 436
Osa05LNT0513700.1 osa-MIR821c 95.88 267 1 266 4.01e-121 431
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus