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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0516100.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTATGAATAATATTACTAACATTTCGTCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.809106
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0516100.1 osa-miR821a Cleavage 1.0 14.571 1 24
Osa05LNT0516100.1 osa-miR821a Translation 4.5 6.647 1 24
Osa05LNT0516100.1 osa-miR821b Cleavage 1.0 14.571 1 24
Osa05LNT0516100.1 osa-miR821b Translation 4.5 6.647 1 24
Osa05LNT0516100.1 osa-miR821c Cleavage 1.0 14.571 1 24
Osa05LNT0516100.1 osa-miR821c Translation 4.5 6.647 1 24
Osa05LNT0516100.1 osa-miR1881 Cleavage 4.5 20.298 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0516100.1 5 QKw5 Morphological trait Seed RG182 RG13
Osa05LNT0516100.1 5 qLTG-5 Resistance or Tolerance Cold tolerance RM249 RG13
Osa05LNT0516100.1 5 yl(t) Morphological trait Shoot/Seedling nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa05LNT0516100.1 osa-MIR821a 97.455 275 1 274 3.16e-132 468
Osa05LNT0516100.1 osa-MIR821b 95.636 275 7 281 2.01e-124 442
Osa05LNT0516100.1 osa-MIR821c 95.88 267 1 266 4.01e-121 431
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus