>Osa04LNT0487200.1

GATATCAACTGAAAAAGTCATCAACAACAAAATTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAATATTTCGTCAGATGAAGAAATAAAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Explanation	CPC Score
noncoding	-1.14059

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0487200.1	osa-miR821a	Cleavage	1.0	14.403	1	24
Osa04LNT0487200.1	osa-miR821a	Translation	4.5	7.506	1	24
Osa04LNT0487200.1	osa-miR821b	Cleavage	1.0	14.403	1	24
Osa04LNT0487200.1	osa-miR821b	Translation	4.5	7.506	1	24
Osa04LNT0487200.1	osa-miR821c	Cleavage	1.0	14.403	1	24
Osa04LNT0487200.1	osa-miR821c	Translation	4.5	7.506	1	24
Osa04LNT0487200.1	osa-miR1881	Cleavage	4.5	24.376	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0487200.1	4	qPEN-4	Morphological trait	Panicle/flower	RG190	RG908
Osa04LNT0487200.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0487200.1	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0487200.1	4	nan	Morphological trait	Root	RM261	RZ69
Osa04LNT0487200.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0487200.1	4	qSNP-4a	Morphological trait	Panicle/flower	RM401	RM335
Osa04LNT0487200.1	4	qCER4-1	Morphological trait	Shoot/Seedling	RG190	RZ69
Osa04LNT0487200.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0487200.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0487200.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa04LNT0487200.1	osa-MIR821a	97.81	274	1	274	6.79e-134	473
Osa04LNT0487200.1	osa-MIR821b	94.545	275	7	281	7.29e-119	424
Osa04LNT0487200.1	osa-MIR821c	95.506	267	1	266	1.87e-119	425

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus