Transcript

Sequence

>Osa03LNT0214200.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATTTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGACAGTAACATTGTTCACAAAATTAACATATCTCTTGTCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTGCTAACATTTTATCGGATGAAGAAATAACAAAAATAAAAGTTCTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.965352

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0214200.1	osa-miR821a	Cleavage	1.0	14.697	1	24
Osa03LNT0214200.1	osa-miR821b	Cleavage	1.0	14.697	1	24
Osa03LNT0214200.1	osa-miR821c	Cleavage	1.0	14.697	1	24
Osa03LNT0214200.1	osa-miR5162	Cleavage	5.0	7.89	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0214200.1	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0214200.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0214200.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0214200.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0214200.1	3	nan	Physiological trait	Eating quality	RZ574	RZ284
Osa03LNT0214200.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0214200.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0214200.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa03LNT0214200.1	osa-MIR821a	95.273	275	1	274	3.2e-122	435
Osa03LNT0214200.1	osa-MIR821b	93.091	275	7	281	9.5e-113	403
Osa03LNT0214200.1	osa-MIR821c	94.382	267	1	266	1.88e-114	409

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus