>Osa07LNT0529900.1

GATTTCAACTGAAAAAGTTATCAACAACAAAGTTGAATAACTCATCAAGATATAAAACTTTTATTTTGGTCATTTCTTCATCTGATAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAACAATGTTACTAACATTTTATCAGATGAAGAAATAACCAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATAACTTTTTCAGTTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.956662

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0529900.1	osa-miR821a	Cleavage	2.5	14.926	1	24
Osa07LNT0529900.1	osa-miR821a	Translation	4.5	12.075	1	24
Osa07LNT0529900.1	osa-miR821b	Cleavage	2.5	14.926	1	24
Osa07LNT0529900.1	osa-miR821b	Translation	4.5	12.075	1	24
Osa07LNT0529900.1	osa-miR821c	Cleavage	2.5	14.926	1	24
Osa07LNT0529900.1	osa-miR821c	Translation	4.5	12.075	1	24
Osa07LNT0529900.1	osa-miR5162	Cleavage	5.0	12.075	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0529900.1	7	qHd-7	Physiological trait	Flowering	RM125	RM432
Osa07LNT0529900.1	7	qLTG-7	Resistance or Tolerance	Cold tolerance	R1440	R1357
Osa07LNT0529900.1	7	dth7.1	Physiological trait	Flowering	RM125	RM336
Osa07LNT0529900.1	7	qLTG-7	Physiological trait	Germination/dormancy	R1440	R1357
Osa07LNT0529900.1	7	QRl7	Morphological trait	Culm/leaf	CDO497	CDO385
Osa07LNT0529900.1	7	sp2(t)	Morphological trait	Panicle/flower	nan	nan
Osa07LNT0529900.1	7	nan	Resistance or Tolerance	Insect resistance	RG773	CDO59

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa07LNT0529900.1	osa-MIR821a	93.455	275	1	274	6.98e-114	407
Osa07LNT0529900.1	osa-MIR821c	93.258	267	1	266	1.89e-109	392

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus