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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0459400.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGTTTATTTCTTCATACGACAAAGTGATAGTAACATTGTTTACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.979494
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0459400.1 osa-miR821a Cleavage 1.0 14.422 1 24
Osa01LNT0459400.1 osa-miR821b Cleavage 1.0 14.422 1 24
Osa01LNT0459400.1 osa-miR821c Cleavage 1.0 14.422 1 24
Osa01LNT0459400.1 osa-miR1881 Cleavage 4.5 22.464 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0459400.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0459400.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0459400.1 1 nan Resistance or Tolerance Drought tolerance RM129 RM5
Osa01LNT0459400.1 1 nan Morphological trait Root RM23 RM306
Osa01LNT0459400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0459400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0459400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0459400.1 1 qNVB-1-1 Morphological trait Culm/leaf R2159 C178
Osa01LNT0459400.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0459400.1 1 nan Resistance or Tolerance Drought tolerance BCD134 RZ776
Osa01LNT0459400.1 1 qVB-1 Morphological trait Culm/leaf RZ776 RZ744
Osa01LNT0459400.1 1 qVB-1 Morphological trait Culm/leaf RZ776 RZ744
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa01LNT0459400.1 osa-MIR821b 96.364 275 7 281 9.3e-128 453
Osa01LNT0459400.1 osa-MIR821a 96.727 275 1 274 6.84e-129 457
Osa01LNT0459400.1 osa-MIR821c 95.88 267 1 266 4.01e-121 431
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus