Transcript

Sequence

>Osa05LNT0516200.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTATGAATAATATTACTAACATTTCGTCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.809106

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0516200.1	osa-miR821a	Cleavage	1.0	14.571	1	24
Osa05LNT0516200.1	osa-miR821a	Translation	4.5	6.647	1	24
Osa05LNT0516200.1	osa-miR821b	Cleavage	1.0	14.571	1	24
Osa05LNT0516200.1	osa-miR821b	Translation	4.5	6.647	1	24
Osa05LNT0516200.1	osa-miR821c	Cleavage	1.0	14.571	1	24
Osa05LNT0516200.1	osa-miR821c	Translation	4.5	6.647	1	24
Osa05LNT0516200.1	osa-miR1881	Cleavage	4.5	20.298	1	24
Osa05LNT0516200.1	osa-miR5162	Cleavage	5.0	6.647	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0516200.1	5	QKw5	Morphological trait	Seed	RG182	RG13
Osa05LNT0516200.1	5	qLTG-5	Resistance or Tolerance	Cold tolerance	RM249	RG13
Osa05LNT0516200.1	5	yl(t)	Morphological trait	Shoot/Seedling	nan	nan

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa05LNT0516200.1	osa-MIR821a	97.455	275	1	274	3.16e-132	468
Osa05LNT0516200.1	osa-MIR821b	95.636	275	7	281	2.01e-124	442
Osa05LNT0516200.1	osa-MIR821c	95.88	267	1	266	4.01e-121	431

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus