>Osa01LNT0454900.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAATACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCAGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.96467

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0454900.1	osa-miR5802	Translation	5.0	13.895	1	24
Osa01LNT0454900.1	osa-miR821a	Cleavage	1.0	14.413	1	24
Osa01LNT0454900.1	osa-miR821a	Translation	4.5	6.654	1	24
Osa01LNT0454900.1	osa-miR821b	Cleavage	1.0	14.413	1	24
Osa01LNT0454900.1	osa-miR821b	Translation	4.5	6.654	1	24
Osa01LNT0454900.1	osa-miR821c	Cleavage	1.0	14.413	1	24
Osa01LNT0454900.1	osa-miR821c	Translation	4.5	6.654	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0454900.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0454900.1	1	An9	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0454900.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0454900.1	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0454900.1	1	Rf	Physiological trait	Sterility	nan	nan
Osa01LNT0454900.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0454900.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0454900.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa01LNT0454900.1	osa-MIR821a	97.818	275	1	274	6.79e-134	473
Osa01LNT0454900.1	osa-MIR821b	95.273	275	7	281	9.37e-123	436
Osa01LNT0454900.1	osa-MIR821c	96.255	267	1	266	8.62e-123	436

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus