>Osa04LNT0492900.1

CTATACATGTAAGCTACCGTTTGATTGAAAAATTGACGTCTGAAACTTATCCATGTCATCACGAGTAAAAACTGTATTTGTAGGTTTAGTCATGAGCTACAAGTAAAATTTGTACTCGAGTAAAAATTATATTGGAAGTAATTTTTTTTCTCATGGTGATGTGGACAATCTCACACATTTATTTTTCGATCTAAAGTTAGTTTTCAG

Explanation	CPC Score
noncoding	-1.16362

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0492900.1	osa-miR1882a	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882b	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882c	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882d	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882e-5p	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882f	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882g	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR1882h	Cleavage	4.0	21.0	1	24
Osa04LNT0492900.1	osa-miR5152-3p	Translation	5.0	20.806	1	21
Osa04LNT0492900.1	osa-miR5340	Cleavage	2.0	14.262	1	23

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0492900.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0492900.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0492900.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0492900.1	4	qNOT4-2	Resistance or Tolerance	Drought tolerance	RG449	RG788
Osa04LNT0492900.1	4	qFRP4-1	Physiological trait	Source activity	RG449	RG788
Osa04LNT0492900.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0492900.1	4	nan	Morphological trait	Root	RG449	RG788
Osa04LNT0492900.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus