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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa10LNT0575300.1

CATAGCGTGAATCTCGGCCATCCAAAACAAATCCAACGGCTGAGATTCGTCCACGTCAAGCCACGTTAAAATTTAACTCGCAGATTTACTCTGAAGTAAAAATTTTACTTCAGGAGTTTAAAATTTCAGTAGTTCTGAGAGTTAAATTTTAACTCGTGATAACGTGGACGAATCCCAGCCGTTGGATTTATTTTTGATGGCCGAGATTCACGCTATG

Coding Potentia
Explanation CPC Score
noncoding -1.21392
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa10LNT0575300.1 DTM_#DNAt_MULE_japo_Os1015 Chr10 + 21999804 22000106 216
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa10LNT0575300.1 osa-miR5340 Cleavage 5.0 21.831 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa10LNT0575300.1 10 nan Physiological trait Sterility RZ811 RG561
Osa10LNT0575300.1 10 nan Morphological trait Seed RZ811 RG561
Osa10LNT0575300.1 10 qRf-10 Physiological trait Sterility RZ811 RG561
Osa10LNT0575300.1 10 Rf1 Physiological trait Sterility nan nan
Osa10LNT0575300.1 10 nan Morphological trait Panicle/flower RM171 RM333
Osa10LNT0575300.1 10 Qbph10 Resistance or Tolerance Insect resistance RM484 RM496
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus