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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa08LNT0556100.1

GTGAGTCAGCATGGGACCCATGTGGGCCCCACATGTCAGGACGCCACGTCATCAGGGTCTCTCTTTCCCCTACTCTCCCTTCCTCCTCTCTCTCTCTCACACACTCATCTCCCTGGGCAGGCCAGCCGCCGGCGATGCGGCAGTGGTGACGCGGCGGCGGCGACACGGGAGAAGAGGAGGGAGGTGGCAGCGGGAGCACGGGGGAGATCAAAGACAACGAGCTCGAGCACTACGGCA

Coding Potentia
Explanation CPC Score
noncoding -1.08943
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa08LNT0556100.1 DTM_#DNAt_MULE_japo_Os0037 Chr8 - 20399503 20400894 236
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa08LNT0556100.1 osa-miR7692-3p Translation 5.0 23.321 1 24
Osa08LNT0556100.1 osa-miR2919 Translation 3.5 10.493 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa08LNT0556100.1 8 qMRLw8 Resistance or Tolerance Other soil stress tolerance RM223 R727
Osa08LNT0556100.1 8 nan Resistance or Tolerance Drought tolerance RG978 RZ66
Osa08LNT0556100.1 8 Aroma Physiological trait Eating quality RG28 RG1
Osa08LNT0556100.1 8 dth8 Physiological trait Flowering RG333 RZ66
Osa08LNT0556100.1 8 nan Physiological trait Source activity R727 R202
Osa08LNT0556100.1 8 QalRr8.1 Resistance or Tolerance Other stress resistance RG28 RM223
Osa08LNT0556100.1 8 QalSr8.1 Resistance or Tolerance Other stress resistance RG28 RM223
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus