>Osa03LNT0465600.1

TATAGTCCCGGTTTTCTAACCGGGACTACGAATCTGGGACTAAAGATCGCTATCTTTAGTCCCGGTTCAAATACCCGGGACTAAAAATCGATCTTTAGTCCCGGTTGGTAACACCAACACCAACCGGGACTAAAGATGGAGCCATTTTTAACCCCGGTTGGTATTACCAACCGGGACTAAAAATAAAGCCAGATCCGGTTAGTATTTTCTTTTTTCTTTTATTGTTTTTTACTTTGAATATTGATTTCACCATATCCCCAAA

Explanation	CPC Score
noncoding	-1.11805

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0465600.1	osa-miR156k	Cleavage	5.0	9.339	1	21
Osa03LNT0465600.1	osa-miR166i-3p	Cleavage	4.5	23.871	1	21
Osa03LNT0465600.1	osa-miR529b	Cleavage	5.0	10.267	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0465600.1	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0465600.1	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0465600.1	3	qLEI3	Resistance or Tolerance	Submergency tolerance	RM7249	RM3803
Osa03LNT0465600.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0465600.1	3	nan	Resistance or Tolerance	Other stress resistance	RM4512	RM8208
Osa03LNT0465600.1	3	qLEI3	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa03LNT0465600.1	3	qGL3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0465600.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0465600.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0465600.1	3	nan	Physiological trait	Eating quality	RZ574	RZ284

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus