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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa06LNT0510900.1

AGCCTTAGACTAGAGAGAGAGAGAGAGGGGGGGTGGGTGTGTGTTTGTGAGTTTTCTCTCTCCAAAACAGCCATGGCGACTTGTTGCACCGAAAGAGCAATGGCGCCGTGACGAGGCGACGTCCGGCGAGGCGGACACATGCCACTACCGGACAACCAACACGCCAATAGTTATTACCCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT

Coding Potentia
Explanation CPC Score
noncoding -1.40005
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0510900.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0510900.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0510900.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0510900.1 6 OVP1 Others Others nan nan
Osa06LNT0510900.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0510900.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0510900.1 6 ppl6.1 Resistance or Tolerance Drought tolerance RM3 CDO78
Osa06LNT0510900.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0510900.1 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus