Transcript

Sequence

>Osa03LNT0245300.1

AAGTCATGAGCAAATAGAAAGAGGGAGGACGAGGCGCACGTGATTCTAGTGAGGGCCCACCTACCAGTCAGCTTGATCATGGCAGGCTGGACTTTCTTGGAACCCGAGCCAAACAAAGATTTATTTATAAACAAAAGATAAAGCAAAAAAGAGAGAGATGAAATTTTGTCTCCTCCTTTTCCCCCTCTCTATTCCAGTTTTTCTTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.08669

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0245300.1	3	nan	Resistance or Tolerance	Drought tolerance	R1925	RG1356
Osa03LNT0245300.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0245300.1	3	Qsbn3b	Morphological trait	Panicle/flower	RM227	RM85
Osa03LNT0245300.1	3	Qsnp3b	Morphological trait	Panicle/flower	RM227	RM85
Osa03LNT0245300.1	3	nan	Morphological trait	Root	R1925	RG1356
Osa03LNT0245300.1	3	qLT3-1	Morphological trait	Shoot/Seedling	RM227	R1925
Osa03LNT0245300.1	3	qPL3-1	Morphological trait	Panicle/flower	R1925	RM227
Osa03LNT0245300.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0245300.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0245300.1	3	qSV-3-2	Physiological trait	Germination/dormancy	RM227	RM85
Osa03LNT0245300.1	3	Qbp1	Resistance or Tolerance	Insect resistance	R1925	R2443

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus