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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0511500.1

CTCGTAGAATTTTCCAAAGCTCTACTGAAAAGTCATTCGGGTATCATTTATTAAAATAGACGTAACTTTCTCATACGGACTCAGAATCAGGCAAATAATATATCCACAGACATCTACAGAAAAAGTTACATCCGATTCTCCCCGCTTTGTCGGGTACGGCGATTCTAAAACCTCCAAATTCTGCTTGCAAGATTGTGTTTTCGAGGAGAGAAGTTTTTCGGTAGAGCTTTGGAAAATTCCACAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.39246
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0511500.1 osa-miR396a-5p Cleavage 5.0 19.149 1 21
Osa06LNT0511500.1 osa-miR396b-5p Cleavage 5.0 19.149 1 21
Osa06LNT0511500.1 osa-miR1846d-3p Translation 4.5 15.384 1 20
Osa06LNT0511500.1 osa-miR5144-3p Translation 5.0 21.62 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0511500.1 6 qLVG6 Resistance or Tolerance Cold tolerance RM340 RM30
Osa06LNT0511500.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0511500.1 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0511500.1 6 ph6 Morphological trait Dwarf RZ667 RG653
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus