>Osa04LNT0492100.1

CTTCTAGAATTTTCCAAAGCTCTCCCGAAAAGTCATTCATGTGTCATTTATTAAAATAGGCGTAACTTTCTCATATGGACTCGAAATCAGGCAAATAATATATCCACGTACATCTACATAAAAAGTTCAGCAATATTAAAACCTCCAAATTCCGCTTGCAAGATTGTGTTTTCGAGGAGAGAAGTTTTTCGGTAGAGCTTTGGAAAATTCCACAT

Explanation	CPC Score
noncoding	-1.41502

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa04LNT0492100.1	DTM_#DNAt_MULE_japo_Os0105	Chr4	-	17709454	17710821	214

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0492100.1	osa-miR396a-5p	Cleavage	5.0	18.421	1	21
Osa04LNT0492100.1	osa-miR396b-5p	Cleavage	5.0	18.421	1	21
Osa04LNT0492100.1	osa-miR1877	Cleavage	3.0	9.145	1	24
Osa04LNT0492100.1	osa-miR5144-3p	Translation	5.0	14.8	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0492100.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan
Osa04LNT0492100.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0492100.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0492100.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0492100.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0492100.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0492100.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0492100.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus