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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0473300.1

GGTGGTGAGAGAGTGAAGCTGCAACATGATCTGATGGAGCCAAATTCCAATCACTCCCACCTCTTACTGAAACTCACAAGAACAATCATAATTCTACCTCTACTAACCAAGCCCACACCTCCTATCACCAATGCTCATCAAGAACCCGTAATTCCCTTCGCAAGTTGACACGACGAAAAACCTCGAAAACGCGGTAATTTCAGTACCACCAACACCATGGATAGATTTGGCTCATGCCTGACAACCAGATCATGCTGGCAGCTTCATTCTCTCACACC

Coding Potentia
Explanation CPC Score
noncoding -1.13221
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0473300.1 osa-miR167a-5p Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167b Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167c-5p Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167d-5p Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167e-5p Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167e-3p Cleavage 0.0 23.335 1 21
Osa02LNT0473300.1 osa-miR167f Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167g Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167h-5p Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167h-3p Translation 2.5 23.335 1 21
Osa02LNT0473300.1 osa-miR167i-5p Cleavage 0.0 15.627 1 21
Osa02LNT0473300.1 osa-miR167i-3p Cleavage 0.0 23.335 1 21
Osa02LNT0473300.1 osa-miR167j Cleavage 0.0 15.627 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0473300.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0473300.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa02LNT0473300.1 osa-MIR167e 100.0 273 1 273 2.4e-143 505
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus