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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0511100.1

TGGTGTGAGAGGCTGAAGCTGCCAGCATGATCTGGTCCATGAGTTGCACTGCTGAATATATTGAATTCAGCCAGGAGCTGCTACTGCAGTTCTGATCTCGATCTGCATTCGTTGTTCTGAGCTATGTATGGATTTGATCGGTTTGAAGGCATCCATGTCTTTAATTTCATCGATCAGATCATGTTGCAGCTTCACTCTCTCACTAC

Coding Potentia
Explanation CPC Score
noncoding -1.0261
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa06LNT0511100.1 osa-miR167a-5p Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167b Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167c-5p Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167d-5p Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167d-3p Translation 2.5 16.322 1 22
Osa06LNT0511100.1 osa-miR167e-5p Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167e-3p Translation 2.5 16.322 1 21
Osa06LNT0511100.1 osa-miR167f Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167g Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167h-5p Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167h-3p Translation 3.5 16.322 1 21
Osa06LNT0511100.1 osa-miR167i-5p Translation 2.5 20.87 1 21
Osa06LNT0511100.1 osa-miR167i-3p Translation 2.5 16.322 1 21
Osa06LNT0511100.1 osa-miR167j Translation 2.5 20.87 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0511100.1 6 amy6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0511100.1 6 asv6-1 Physiological trait Eating quality RM3 RM217
Osa06LNT0511100.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0511100.1 6 tgw6.1 Physiological trait Source activity RG264 RM3
Osa06LNT0511100.1 6 nan Morphological trait Root RM4447 RM5509
Osa06LNT0511100.1 6 ppl6.1 Resistance or Tolerance Drought tolerance RM3 CDO78
Osa06LNT0511100.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0511100.1 6 qLDLJ-6-1,2,3 Physiological trait Source activity RM217 RM3
Osa06LNT0511100.1 6 nan Morphological trait Culm/leaf RG653 RZ140
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa06LNT0511100.1 osa-MIR167i 100.0 201 1 201 1.81e-103 372
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus