>Osa01LNT0020500.1

GTGTTGTGGACGTTGAGCTCCTTTCGGTCCAAAAAGGGGTGTTGCTGTGGGTCGATTGAGCTGCTGGGTCATGGATCCCGTTAGCCTACTCCATGTTCATCATTCAGCTCGAGATCTGAAAGAAACTACTCCAATTTATACTAATAGTATGTGTGTAGATAGGAAAATGATGGAGTACTCGTTGTTGGGATAGGCTTATGGCTTGCATGCCCCAGGAGCTGCATCAACCCTACATGGACCCTCTTTGGATTGAAGGGAGCTCTGCATCTTTTGT

Explanation	CPC Score
noncoding	-1.36129

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0020500.1	osa-miR159a.1	Cleavage	1.5	16.436	1	21
Osa01LNT0020500.1	osa-miR159b	Cleavage	1.5	16.436	1	21
Osa01LNT0020500.1	osa-miR159c	Cleavage	2.5	16.436	1	21
Osa01LNT0020500.1	osa-miR159d	Cleavage	2.5	16.436	1	21
Osa01LNT0020500.1	osa-miR159e	Cleavage	2.5	16.436	1	21
Osa01LNT0020500.1	osa-miR159f	Cleavage	2.5	16.436	1	21
Osa01LNT0020500.1	osa-miR319a-3p.2-3p	Cleavage	3.0	16.436	1	20
Osa01LNT0020500.1	osa-miR319b	Cleavage	3.0	16.436	1	20
Osa01LNT0020500.1	osa-miR168b	Cleavage	5.0	21.895	1	21
Osa01LNT0020500.1	osa-miR5507	Translation	5.0	21.267	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0020500.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0020500.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0020500.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0020500.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0020500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0020500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0020500.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0020500.1	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa01LNT0020500.1	osa-MIR159a	100.0	272	1	272	8.59e-143	503

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus