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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0134300.1

GCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACCCGAGCAATACTTCTCCCCGAAGATAGCTCCAAGAGTTGCTTTCGACAGTTTAGGGATGTGCTCTTGGTTAAAAAATAAAAAATCAGCATCAATTGGGAGGCAATGCATCCACAAGTTCATAATAACGTTGAAAGAACTTATGCCATCGTCGAAATAAATTCATTCGCCCATGAAGGGAGAGGTGACCGGAAGGTGACTGGCAATCCAGTGACTGGGTGTACAAATGACAAGCTCTCAGCATGCAATGCATGGCCATCATAATCCACACCATTCCACTCAATAACTCCGCTGTACTTCACATCACCTCTGATAGGGAACCCAAGATACTGACAGTGCAGACGAATCTGATGTGTTCGTCCACTCTGAGGATAGGCTCTAACCAAAATTATGCTGTTCTTCTCATCACCATCTGAAGTCAGGTCAGCTGCCTTCTCTTGTACGGTAATAGACTCTGTTTCATCAACTTCAAAATTAGATGGTTCTCTAAACTGTCCCTTGCCATTGATTCCCAGAACTTCAAATCGTGTACTCATGTCGCGTACAACGGAACCCCCTGGTAGTGATCGTCCAACATCAGACATAGCGTACACACGCCAAGCACCATGTTTTGATCGACCATGGCCAGAGCATATCTTAATCTTCTCCCATGCTGGTGGGTAACCTATGCAAAGAGCTAGATATGTTTTCTTAACTTTGTGCTCTGTAAACGCCTTCACTAGCTTCCCAGCAACCTTATTGCATTTGGTAATAACCATGAGCCCACTGGTATCACGGTCTAGCCTGTTGGCGAGGTGAAGGTTAGGTTTAGTTGCTTCATCCCCTAATGTGGCAGCGGAGCAAGGGAGAGCGGAGAGGAGGGCGTCGCAGTAGACTCCCGCGGGCTTGTCGACGACGGCGAGCCACTCGTCCTCGAACACGACGGGCGCGGAGGAGTAGGCGGCGGAGCGCGCCGAGGCCGTCATGGCGCGCCGGAGCTCCACGTCCTTGGACGCCGCCGGGTAGGGAGGGGAGACCGGGACCGGGTACTCCCCGGTTGCCGCCGACATCGCGAGCGATAGGTCTCCTCCTGCAGCGGCGGCGACGAGGCGGCGCGCCGGTGGCAGCGGCGGCGGCGGCGGCGTGGTCAGTGCGGCGGCGAAGCGGGGCGAGTGGAGGAGGAGGGGTAGTCTCGTCATTTGCCACTCCC

Coding Potentia
Explanation CPC Score
noncoding -1.26883
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0134300.1 12 22948523 G T
Osa12LNT0134300.1 12 22948603 G A
Osa12LNT0134300.1 12 22948729 C G
Osa12LNT0134300.1 12 22949667 G A
Osa12LNT0134300.1 12 22949754 A G
Osa12LNT0134300.1 12 22949763 G A
Osa12LNT0134300.1 12 22950625 C T
Osa12LNT0134300.1 12 22950785 A C
Osa12LNT0134300.1 12 22950146 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0134300.1 osa-miR5823 Cleavage 4.5 22.56 1 24
Osa12LNT0134300.1 osa-miR435 Translation 5.0 11.982 1 20
Osa12LNT0134300.1 osa-miR2924 Cleavage 4.5 23.29 1 21
Osa12LNT0134300.1 osa-miR5162 Translation 3.0 24.306 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0134300.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0134300.1 12 nan Morphological trait Seed RG543 RG81
Osa12LNT0134300.1 12 Bph18(t) Resistance or Tolerance Insect resistance RM463 S15552
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus