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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa12LNT0134400.1

CCCTTAAGCTGTTACTGGCATATATTAAAGACAGATTTTAAGATAATACAAGAAAAGAAGCAAATTCAACGAGATCAAATGTTCTCAAATTGCTATGCTTATTTTTCATGACAATCTCCACGGCACTAGCTTTGTCATGCTCTCCAGAGAGTTTCAGAAATAACTTGCAAAAAACAAAGGCAAAAGACTTTCAACACAAAAGACTACTCCTCGACGACAACACTGATCTGGCCCTTCTCGAGCATGTCGTAGAAGGATCTAGTCTTCCTCTGCTCGTTCCAGTGATGCATCTTCCACAGACCACCAGCGACCAGCCCAAGGGTGAGCCCAATGCAGATCTCCTTCACCACGCTCGGCCCCTTGAGGGTCGCATGTGCAATTCTGCCACCTGCCATTTGCTTGCTGTTGAGCTCAGATGCCTTGCCGCCGGTGGAGGAGGATAGACGCCGCGCCGCCGCCGCGAGGGAGAGGAGGAGGAAGCCTTTGGATTTCTGCGTGGAGGAGGGGAGTTTTTGCGGAAAGGCCCTTAAAAGGGCCCGAATTAGCG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.516822
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa12LNT0134400.1 12 22969633 G A
Osa12LNT0134400.1 12 22969908 A G
Osa12LNT0134400.1 12 22970545 A G
Osa12LNT0134400.1 12 22970944 A T
Osa12LNT0134400.1 12 22971172 A G
Osa12LNT0134400.1 12 22971607 A C
Osa12LNT0134400.1 12 22971649 G A
Osa12LNT0134400.1 12 22972364 C A
Osa12LNT0134400.1 12 22969960 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa12LNT0134400.1 osa-miR5503 Cleavage 5.0 20.132 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa12LNT0134400.1 12 qDLA-12-3 Resistance or Tolerance Blast resistance RG463 RZ816
Osa12LNT0134400.1 12 nan Morphological trait Seed RG543 RG81
Osa12LNT0134400.1 12 Bph18(t) Resistance or Tolerance Insect resistance RM463 S15552
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus